SeqXML Biopython support

Installation

The API is now fully integrated into Biopython.
Check this website for more details about the Biopython installation.http://biopython.orghttp://biopython.org/DIST/docs/install/Installation.htmlshapeimage_2_link_0shapeimage_2_link_1

Usage

   

    Reading with the standard Biopython Bio.SeqIO function:


  1. from Bio import SeqIO   

  2. fileHandle = open("SEQXML_FILE","r")

  3. records = list(SeqIO.parse(fileHandle, "seqxml"))

   


    Writing with the standard Biopython Bio.SeqIO function:


  1. from Bio import SeqIO

  2. import sys

  3. SeqIO.write(records,sys.stdout,"seqxml")